site stats

Tisged: a database for tissue-specific genes

WebApr 10, 2024 · This also further developed an early-stage LUAD-specific mutation gene panel for clinical utility. ... Genomic alterations in early-stage LUAD of TCGA database. This study analyzed gene mutations across 131 samples of early-stage LUAD in the TCGA database to systematically characterize genomic alterations that occur in early-stage LUAD ... Summary: The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes helps better understanding of tissue–gene relationship, etiology and discovery of novel tissue-specific drug targets. See more The spatial and temporal variation in gene expression carries crucial information of what the gene does (Bassett et al., 1999). Thanks to the … See more Strictly, the tissue-specific gene is defined as gene whose function and expression is restricted to a particular tissue or cell type. However, in many cases, the specificity concept is broadened … See more The microarray datasets and their latest gene chip annotation files were derived from public microarray repositories GNF BioGPS, NCBI GEO and EBI ArrayExpress. In current version of database, eight high-quality datasets were … See more The TiSGeD database is now accessible at http://bioinf.xmu.edu.cn/databases/TiSGeD/index.html. It was curated on Red Hat Linux release 9 operating system. The data were managed by the RDBMS Oracle … See more

Advances in Pathobiology of Primary Central Nervous System …

WebFeb 18, 2016 · One group summarizes in a single number whether a gene is tissue specific or ubiquitously expressed (Tau, Gini, TSI, Counts and Hg), and the second group shows for … http://bioinf.xmu.edu.cn/PaGenBase/ fibem tourcoing https://rendez-vu.net

Genome-Wide Discovery of Tissue-Specific Genes in Maize

WebNov 2, 2012 · The query genes, in this study, were normal lung tissue specific genes from the Tissue-Specific Genes Database (TiSGeD). The genes of interest were candidate lung cancer genes from DDD [13, 14]. Surprisingly, this approach successfully distinguished 38 signature biomarkers for lung cancer. Thus this suggests that, in principle, this integrated ... WebMar 11, 2010 · The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes … WebJun 9, 2008 · A large set of data on both tissue-specific genes and tissue-specific transcriptional regulatory elements: The database contains tissue-specific expression … deputy district attorney jon hatami

GIPC2 is an endocrine-specific tumor suppressor gene for both

Category:TiGER: Tissue-specific Gene Expression and Regulation

Tags:Tisged: a database for tissue-specific genes

Tisged: a database for tissue-specific genes

TiGER: Tissue-specific Gene Expression and Regulation

http://bioinf.xmu.edu.cn/PaGeFinder/index.jsp WebMay 1, 2010 · The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these …

Tisged: a database for tissue-specific genes

Did you know?

WebOct 18, 2011 · Database content statistics. By integrating organ-specific protein/genes and disease databases including dbEST [], TiSGeD [], HPA [], CTD [], and Disease Ontology [], we have developed HOMER, the Human Organ-specific Molecular Electronic Repository.As of the current release (June 2011), HOMER contains 22,598 proteins (IPI IDs), 5,703 genes … WebApr 1, 2011 · VeryGene serves as a TSG-specific knowledgebase and a discovery tool to generate testable hypotheses for basic and clinical research. METHODS Although there are several TSG sets identified from other independent studies, the respective coverage of sample and tissue number is often limited.

WebBroadly, these metrics can be divided into two groups 9: (1) general scoring metrics, that summarize in a single value how tissue-specific or ubiquitous is a gene across all tissues … WebMar 28, 2014 · The criteria for selecting tissue-specific gene candidates were that the number of mapped reads should be more than 100 in the target tissue and less than 10 in the other tissues. We identified 30 tissue-specific genes, 10 genes from each sample, used them for RT-PCR. The tissue-specific genes and corresponding primers are shown in …

WebWe first collected 8,172 TissGenes across 22 tissue types, which are matched with the 28 cancer types of The Cancer Genome Atlas (TCGA) project, from three representative tissue-specific gene expression resources: The Human Protein Atlas (HPA), tissue-specific gene expression and regulation (TiGER), and Genotype-Tissue Expression (GTEx). WebJun 23, 2024 · The number of tissue-specific genes varied from tissue to tissue. Testis expressed the most tissue-specific genes (2,496), closely followed by brain (708) and …

WebSummary: The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes helps better …

WebObjective: Primary central nervous system lymphoma (PCNSL) is a specific type of non-Hodgkin lymphoma with poor prognosis. The rare incidence of this disease and difficulty to obtain sufficient tissue material impede deep research into PCNSL. However, application of modern molecular techniques makes it possible to find biological characteristics … deputy district attorney lane county oregonWebJan 3, 2024 · Introduction. The specifically expressed genes (SEGs), which are expressed in a unique or a small number of tissues/physiological conditions, could serve as biomarkers and provide important clues for gene function and tissue-specific characteristics [].In recent years, high-throughput sequencing techniques provided abundant data to examine gene … fibe-miniWebResults. Altogether, 14 chitinase-related genes (12 chitinase genes and 2 IDGFs) encoding 17 proteins were identified.Phylogenetic analysis showed that all these AaChts were classified into seven groups, and most of them were gathered into group IX.Only AaCht5-1, AaCht10 and AaCht18 contained both catalytic and chitin-binding domains.Different … fi benchmarkWebFeb 12, 2013 · TiSGeD was also based on a collection from publicly available microarray experiment, but provided very vague definition of “well curated publicly” good data. Plus (as you indicated) it has a dead link anyway. Shyamasundar, R. et al paper on Genome Biology (2005) was a good pick. fibem biache saint vaastWebNov 1, 2024 · The TissueEnrich package is used to calculate enrichment of tissue-specific genes in a set of input genes. For example, the user can input the most highly expressed genes from RNA-Seq data, or gene co-expression modules to determine which tissue-specific genes are enriched in those datasets. Tissue-specific genes were defined by … fibenare roadmaster 56 thinlineWebUNLABELLED: The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes … fibe newsWebApr 26, 2024 · TiSGeD: A database for tissue-specific genes. Bioinformatics. 2010;26:1273–5. Article CAS Google Scholar Kim P, Park A, Han G, Sun H, Jia P, Zhao Z. TissGDB: Tissue-specific gene database in cancer. Nucleic Acids Res. 2024;46:D1031–8. Article CAS Google Scholar Tang Z, Kang B, Li C, Chen T, Zhang Z. GEPIA2: an enhanced … deputy district attorney marlene martinez